I am trying to co-extract DNA and RNA from body fluid stains (e.g. blood, semen and saliva) for forensic casework which may have very small amount of the biological sample. I am thinking of Allprep DNA/RNA micro kit from Qiagen. However, I was told that the RLT buffer was not designed for very small sample volumes or sizes so that the yield would be very low. It was recommended to use QIAamp DNA Investigator instead, but the DNA and RNA will be in the same tube which is not ideal for my experiment. If I want to separate DNA and RNA, I would like to use ATL and AL buffer from QIAamp DNA Investigator to start, and then transfer the lysate to AllPrep DNA spin column to separate the DNA and RNA. However, from my understanding, DNA binds to silica column at higher pH (8-9) but RNA binds at acidic pH (4-5). I was not sure the pH of the ATL and AL buffer from QIAamp DNA Investigator. I would like to have your advise.
Monday, August 2, 2010
Bioelectronic DNA detection involves forming an electronic circuit mediated by nucleic acid hybridization and it serves as the basis for a DNA detection system called eSensor™ [1-4]. This system uses low-density DNA chips containing electrodes coated with DNA capture probes. Target DNA present in the sample hybridizes specifically both to capture probes and ferrocene labeled signal probes in solution thereby generating an electric current. Currente Sensor DNA chips contain as many as 36 electrodes for simultaneous detection of multiple pathogens from a single sample.
Many pathogens cause both acute and chronic disease at relatively low copy number and may be difficult or impossible to propagate in culture. Thus, most pathogen detection systems rely on nucleic acid amplification by using polymerase chain reaction (PCR). One highly effective amplification strategy targets conserved sequences among the family of organisms of interest. Such broad-range PCR strategies have been used to identify and characterize several known and previously uncharacterized bacteria [5,6] and viruses [7,8]. In order to maximize the utility of these effective pathogen nucleic acid amplification systems, amplification needs to be coupled with rapid, sensitive, and specific detection. Bioelectronic DNA detection by use of the eSensor chip might fulfill this need.
Human papillomaviruses (HPV) serve as an ideal model system for determining the efficiency and feasibility of eSensor DNA detection technology since there are at least 30 distinct genital HPV types that can be effectively amplified with broad-range consensus PCR primers. We designed two eSensor chips, each containing 14 probes specific for the conserved L1 region of the HPV genome. We evaluated clinical cervical cytology samples known to contain one or more HPV types. The eSensor DNA detection platform successfully detected the correct HPV type in most of these clinical samples, demonstrating that the system provides a rapid, sensitive, specific, and economical approach for multiple-pathogen detection and identification from a single sample.Background We used human papillomaviruses (HPV) as a model system to evaluate the utility of a nucleic acid, hybridization-based bioelectronic DNA detection platform (eSensor) in identifying multiple pathogens.